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Adds possibility to provide the ngsfilter configuration as a CSV file

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Former-commit-id: f0fd2cb1a7b149ae2a330edc5087b21be2c4585b
This commit is contained in:
Eric Coissac
2024-05-31 11:08:20 +02:00
parent dbeb44bc79
commit 4487723d14
4 changed files with 160 additions and 12 deletions
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3
pkg/obitools/obimultiplex/options.go
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@@ -8,6 +8,8 @@ import (
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obingslibrary"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obiconvert"
"github.com/DavidGamba/go-getoptions"
log "github.com/sirupsen/logrus"
)
var _NGSFilterFile = ""
@@ -74,6 +76,7 @@ func CLINGSFIlter() (obingslibrary.NGSLibrary, error) {
return nil, fmt.Errorf("open file error: %v", err)
}
log.Infof("Reading NGSFilter file: %s", _NGSFilterFile)
ngsfiler, err := obiformats.ReadNGSFilter(file)
if err != nil {