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Adds a reader for NGS filter files and change some API for the apat library

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This commit is contained in:
Eric Coissac
2022-01-18 13:09:32 +01:00
parent 6571296bb2
commit 4551df08b1
13 changed files with 301 additions and 96 deletions
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6
pkg/obiformats/embl_read.go
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@@ -184,8 +184,8 @@ func ReadEMBLBatch(reader io.Reader, options ...WithOption) obiseq.IBioSequenceB
newIter := obiseq.MakeIBioSequenceBatch(opt.BufferSize())
// newIter.Add(opt.ParallelWorkers())
newIter.Add(2)
nworkers := opt.ParallelWorkers()
newIter.Add(nworkers)
go func() {
newIter.Wait()
@@ -196,7 +196,7 @@ func ReadEMBLBatch(reader io.Reader, options ...WithOption) obiseq.IBioSequenceB
}()
// for j := 0; j < opt.ParallelWorkers(); j++ {
for j := 0; j < 2; j++ {
for j := 0; j < nworkers; j++ {
go _ParseEmblFile(entry_channel, newIter)
}