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Fisrt versin of the two levels indexing

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Former-commit-id: 4d86483bc120e27cb6f5d2c216596d410274fc69
This commit is contained in:
Eric Coissac
2024-07-12 15:17:48 +02:00
parent 42c5881ddc
commit 4e4fac491f
9 changed files with 319 additions and 19 deletions
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4
pkg/obitools/obicleandb/obicleandb.go
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@@ -279,7 +279,7 @@ func ICleanDB(itertator obiiter.IBioSequence) obiiter.IBioSequence {
mannwithney := MakeSequenceFamilyGenusWorker(references)
partof := obiiter.IBatchOver(references,
obioptions.CLIBatchSize()).Speed("Testing belonging to genus")
obioptions.CLIBatchSize())
// genera_iterator, err := obichunk.ISequenceChunk(
// annotated,
@@ -295,5 +295,5 @@ func ICleanDB(itertator obiiter.IBioSequence) obiiter.IBioSequence {
// false,
// )
return partof.MakeIWorker(mannwithney, true)
return partof.MakeIWorker(mannwithney, true).Speed("Testing belonging", references.Len())
}