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Patch a bug in fasta and fastq reading

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Former-commit-id: bcaa264b4c4a7c67617eb909b199176bf09913db
This commit is contained in:
Eric Coissac
2024-06-21 14:28:57 +02:00
parent 818ce87bab
commit 54a138196c
9 changed files with 85 additions and 44 deletions
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9
pkg/obiformats/fastaseq_read.go
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@@ -50,13 +50,12 @@ func _ParseFastaFile(source string,
var identifier string
var definition string
state := 0
idBytes := new(bytes.Buffer)
defBytes := new(bytes.Buffer)
seqBytes := new(bytes.Buffer)
idBytes := bytes.Buffer{}
defBytes := bytes.Buffer{}
seqBytes := bytes.Buffer{}
for chunks := range input {
state := 0
scanner := bufio.NewReader(chunks.raw)
start, _ := scanner.Peek(20)
if start[0] != '>' {