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Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

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This commit is contained in:
Eric Coissac
2025-03-25 16:44:46 +01:00
parent 2ab6f67d58
commit 5a3705b6bb
52 changed files with 151 additions and 90 deletions
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6
pkg/obiseq/worker.go
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@@ -4,7 +4,7 @@ import (
"fmt"
"slices"
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obilog"
)
type SeqAnnotator func(*BioSequence)
@@ -119,7 +119,7 @@ func SeqToSliceWorker(worker SeqWorker,
s.Id(), err)
return BioSequenceSlice{}, err
} else {
log.Warnf("got an error on sequence %s processing : %v",
obilog.Warnf("got an error on sequence %s processing : %v",
s.Id(), err)
}
}
@@ -208,7 +208,7 @@ func SeqToSliceConditionalWorker(
s.Id(), err)
return BioSequenceSlice{}, err
} else {
log.Warnf("got an error on sequence %s processing : %v",
obilog.Warnf("got an error on sequence %s processing : %v",
s.Id(), err)
}
}