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a first version of obisummary

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Former-commit-id: cca1019d82a14a322f46a20890b996b5c7491d41
This commit is contained in:
Eric Coissac
2023-11-09 22:33:06 +02:00
parent a96ecb4837
commit 5ea2b8afcf
7 changed files with 378 additions and 30 deletions
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32
pkg/obitools/obitagpcr/pcrtag.go
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@@ -111,11 +111,11 @@ func IPCRTagPESequencesBatch(iterator obiiter.IBioSequence,
}
} else {
demultiplex_error := consensus.Annotations()["demultiplex_error"]
if demultiplex_error!=nil {
if demultiplex_error != nil {
A.Annotations()["demultiplex_error"] = demultiplex_error.(string)
B.Annotations()["demultiplex_error"] = demultiplex_error.(string)
} else {
log.Panicln("@@ ",wid,"Error : ",err,*consensus)
log.Panicln("@@ ", wid, "Error : ", err, *consensus)
}
}
}
@@ -160,31 +160,3 @@ func IPCRTagPESequencesBatch(iterator obiiter.IBioSequence,
return iout
}
// if match.IsDirect {
// annot["direction"] = "direct"
// } else {
// annot["direction"] = "reverse"
// }
// if match.ForwardMatch != "" {
// annot["forward_match"] = match.ForwardMatch
// annot["forward_mismatches"] = match.ForwardMismatches
// annot["forward_tag"] = match.ForwardTag
// }
// if match.ReverseMatch != "" {
// annot["reverse_match"] = match.ReverseMatch
// annot["reverse_mismatches"] = match.ReverseMismatches
// annot["reverse_tag"] = match.ReverseTag
// }
// if match.Error == nil {
// if match.Pcr != nil {
// annot["sample"] = match.Pcr.Sample
// annot["experiment"] = match.Pcr.Experiment
// for k, val := range match.Pcr.Annotations {
// annot[k] = val
// }
// } else {
// annot["demultiplex_error"]