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Patch rev complement and first implementation of --auto in obicsv

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Former-commit-id: f3020e81283b1073c4d1c2d2ff0887e3998e6764
This commit is contained in:
Eric Coissac
2023-11-07 09:37:07 +02:00
parent 6a6a6f6f2c
commit 61c30f9b6a
21 changed files with 270 additions and 107 deletions
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2
pkg/obiformats/fastqseq_read.go
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@@ -329,7 +329,7 @@ func ReadFastq(reader io.Reader, options ...WithOption) (obiiter.IBioSequence, e
parser := func() {
defer out.Done()
for chk := range chkchan {
seqs := ParseFastqChunk(source, chk, byte(opt.QualityShift()))
seqs := ParseFastqChunk(source, chk, byte(obioptions.InputQualityShift()))
if seqs != nil {
out.Push(*seqs)
} else {