obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-12-09 01:00:26 +00:00
Code Issues Packages Projects Releases Wiki Activity

Patch rev complement and first implementation of --auto in obicsv

Browse Source 
Former-commit-id: f3020e81283b1073c4d1c2d2ff0887e3998e6764
This commit is contained in:
Eric Coissac
2023-11-07 09:37:07 +02:00
parent 6a6a6f6f2c
commit 61c30f9b6a
21 changed files with 270 additions and 107 deletions
Download Patch File Download Diff File Expand all files Collapse all files

3
pkg/obitools/obicsv/obicsv.go
View File

@@ -27,8 +27,6 @@ func CLIWriteCSV(iterator obiiter.IBioSequence,
opts = append(opts, obiformats.OptionsParallelWorkers(nworkers))
opts = append(opts, obiformats.OptionsBatchSize(obioptions.CLIBatchSize()))
opts = append(opts, obiformats.OptionsQualityShift(obiconvert.CLIOutputQualityShift()))
opts = append(opts, obiformats.OptionsCompressed(obiconvert.CLICompressed()))
opts = append(opts, obiformats.CSVId(CLIPrintId()),
@@ -37,6 +35,7 @@ func CLIWriteCSV(iterator obiiter.IBioSequence,
obiformats.CSVDefinition(CLIPrintDefinition()),
obiformats.CSVKeys(CLIToBeKeptAttributes()),
obiformats.CSVSequence(CLIPrintSequence()),
obiformats.CSVAutoColumn(CLIAutoColumns()),
)
var err error