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A go implementation of the fasta reader

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Former-commit-id: 603592c4761fb0722e9e0501d78de1bd3ba238fa
This commit is contained in:
Eric Coissac
2023-09-01 09:30:12 +02:00
parent 3f8c0d6a2f
commit 62b57f4ede
15 changed files with 1403 additions and 77 deletions
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4
pkg/obiformats/fastseq_read.go
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@@ -124,7 +124,7 @@ func ReadFastSeqFromFile(filename string, options ...WithOption) (obiiter.IBioSe
log.Debugln("Full file batch mode : ", opt.FullFileBatch())
if opt.FullFileBatch() {
newIter = newIter.FullFileIterator()
newIter = newIter.CompleteFileIterator()
}
parser := opt.ParseFastSeqHeader()
@@ -155,7 +155,7 @@ func ReadFastSeqFromStdin(options ...WithOption) obiiter.IBioSequence {
log.Debugln("Full file batch mode : ", opt.FullFileBatch())
if opt.FullFileBatch() {
newIter = newIter.FullFileIterator()
newIter = newIter.CompleteFileIterator()
}
parser := opt.ParseFastSeqHeader()