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Patch reading of annotation from stdin

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This commit is contained in:
Eric Coissac
2022-09-29 14:48:05 +02:00
parent d0f63fda56
commit 65210755cc
3 changed files with 17 additions and 5 deletions
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4
pkg/obiformats/fastseq_read.c
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@@ -52,6 +52,7 @@ fast_kseq_p open_fast_sek_fd(int fd, bool keep_open, int shift) {
fd = dup(fd);
fp = gzdopen(fd, "r");
return _open_fast_sek(fp, shift);
}
@@ -67,8 +68,11 @@ int64_t next_fast_sek(fast_kseq_t* iterator) {
return -3;
l = kseq_read(iterator->seq);
if (l < 0) l = 0;
iterator->finished = l==0;
if (l>0) l = gzoffset(iterator->filez);
return l;
}