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Plenty of small bugs

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Former-commit-id: 42c7fab7d65906c80ab4cd32da6867ff21842ea8
This commit is contained in:
Eric Coissac
2024-06-04 16:49:12 +02:00
parent e843d2aa5c
commit 65f5109957
15 changed files with 894 additions and 264 deletions
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14
pkg/obitools/obitagpcr/pcrtag.go
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@@ -33,12 +33,6 @@ func IPCRTagPESequencesBatch(iterator obiiter.IBioSequence,
newIter := obiiter.MakeIBioSequence()
newIter.MarkAsPaired()
newIter.Add(nworkers)
go func() {
newIter.WaitAndClose()
log.Printf("End of the sequence PCR Taging")
}()
f := func(iterator obiiter.IBioSequence, wid int) {
arena := obialign.MakePEAlignArena(150, 150)
@@ -128,16 +122,22 @@ func IPCRTagPESequencesBatch(iterator obiiter.IBioSequence,
log.Printf("Start of the sequence Pairing using %d workers\n", nworkers)
newIter.Add(nworkers)
for i := 1; i < nworkers; i++ {
go f(iterator.Split(), i)
}
go f(iterator, 0)
go func() {
newIter.WaitAndClose()
log.Printf("End of the sequence PCR Taging")
}()
iout := newIter
if !obimultiplex.CLIConservedErrors() {
log.Println("Discards unassigned sequences")
iout = iout.Rebatch(obioptions.CLIBatchSize())
iout = iout.FilterOn(obiseq.HasAttribute("demultiplex_error").Not(), obioptions.CLIBatchSize())
}
var unidentified obiiter.IBioSequence