Add managment of the taxonomy alias politic

pkg/obioptions/options.go

@@ -177,6 +177,15 @@ func LoadTaxonomyOptionSet(options *getoptions.GetOpt, required, alternatiive bo
 			options.Alias("a"),
 			options.Description("Enable the search on all alternative names and not only scientific names."))
 	}
+
+	options.BoolVar(obidefault.FailOnTaxonomyPtr(), "fail-on-taxonomy",
+		obidefault.FailOnTaxonomy(),
+		options.Description("Make obitools failing on error if a used taxid is not a currently valid one"),
+	)
+
+	options.BoolVar(obidefault.UpdateTaxidPtr(), "update-taxid", obidefault.UpdateTaxid(),
+		options.Description("Make obitools automatically updating the taxid that are declared merged to a newest one."),
+	)
 }
 
 // CLIIsDebugMode returns whether the CLI is in debug mode.

pkg/obioptions/version.go

@@ -8,7 +8,7 @@ import (
 // corresponds to the last commit, and not the one when the file will be
 // commited
 
-var _Commit = "f2e81ad"
+var _Commit = "e2563cd"
 var _Version = "Release 4.2.0"
 
 // Version returns the version of the obitools package.