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Remove single sequence ierators. Only batch iterators persist

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coissac committed 2022-11-16 10:58:59 +01:00
1 parent f674200a6e
commit 6f853da9df
14 files changed
+4 -651
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pkg/obiformats/fastseq_read.go
-10
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@@ -132,11 +132,6 @@ func ReadFastSeqBatchFromFile(filename string, options ...WithOption) (obiiter.I
return newIter, err
}
func ReadFastSeqFromFile(filename string, options ...WithOption) (obiiter.IBioSequence, error) {
ib, err := ReadFastSeqBatchFromFile(filename, options...)
return ib.SortBatches().IBioSequence(), err
}
func ReadFastSeqBatchFromStdin(options ...WithOption) obiiter.IBioSequenceBatch {
opt := MakeOptions(options)
newIter := obiiter.MakeIBioSequenceBatch(opt.BufferSize())
@@ -158,8 +153,3 @@ func ReadFastSeqBatchFromStdin(options ...WithOption) obiiter.IBioSequenceBatch
return newIter
}
func ReadFastSeqFromStdin(options ...WithOption) obiiter.IBioSequence {
ib := ReadFastSeqBatchFromStdin(options...)
return ib.SortBatches().IBioSequence()
}