obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-12-08 16:50:27 +00:00
Code Issues Packages Projects Releases Wiki Activity

Remove single sequence ierators. Only batch iterators persist

Browse Source
This commit is contained in:
Eric Coissac
2022-11-16 10:58:59 +01:00
parent f674200a6e
commit 6f853da9df
14 changed files with 4 additions and 651 deletions
Download Patch File Download Diff File Expand all files Collapse all files

10
pkg/obiformats/fastseq_read.go
View File

@@ -132,11 +132,6 @@ func ReadFastSeqBatchFromFile(filename string, options ...WithOption) (obiiter.I
return newIter, err
}
func ReadFastSeqFromFile(filename string, options ...WithOption) (obiiter.IBioSequence, error) {
ib, err := ReadFastSeqBatchFromFile(filename, options...)
return ib.SortBatches().IBioSequence(), err
}
func ReadFastSeqBatchFromStdin(options ...WithOption) obiiter.IBioSequenceBatch {
opt := MakeOptions(options)
newIter := obiiter.MakeIBioSequenceBatch(opt.BufferSize())
@@ -158,8 +153,3 @@ func ReadFastSeqBatchFromStdin(options ...WithOption) obiiter.IBioSequenceBatch
return newIter
}
func ReadFastSeqFromStdin(options ...WithOption) obiiter.IBioSequence {
ib := ReadFastSeqBatchFromStdin(options...)
return ib.SortBatches().IBioSequence()
}