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Changes to be committed:

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modified:   cmd/obitools/obitag/main.go
	modified:   cmd/obitools/obitag2/main.go
	modified:   go.mod
	modified:   go.sum
	modified:   pkg/obiformats/ncbitaxdump/read.go
	modified:   pkg/obioptions/version.go
	modified:   pkg/obiseq/attributes.go
	modified:   pkg/obiseq/taxonomy_lca.go
	modified:   pkg/obiseq/taxonomy_methods.go
	modified:   pkg/obiseq/taxonomy_predicate.go
	modified:   pkg/obitax/inner.go
	modified:   pkg/obitax/lca.go
	new file:   pkg/obitax/taxid.go
	modified:   pkg/obitax/taxon.go
	modified:   pkg/obitax/taxonomy.go
	modified:   pkg/obitax/taxonslice.go
	modified:   pkg/obitools/obicleandb/obicleandb.go
	modified:   pkg/obitools/obigrep/options.go
	modified:   pkg/obitools/obilandmark/obilandmark.go
	modified:   pkg/obitools/obilandmark/options.go
	modified:   pkg/obitools/obirefidx/famlilyindexing.go
	modified:   pkg/obitools/obirefidx/geomindexing.go
	modified:   pkg/obitools/obirefidx/obirefidx.go
	modified:   pkg/obitools/obirefidx/options.go
	modified:   pkg/obitools/obitag/obigeomtag.go
	modified:   pkg/obitools/obitag/obitag.go
	modified:   pkg/obitools/obitag/options.go
	modified:   pkg/obiutils/strings.go
This commit is contained in:
Eric Coissac
2024-12-19 13:36:59 +01:00
parent f41a6fbb60
commit 795df34d1a
28 changed files with 590 additions and 280 deletions
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14
pkg/obitax/taxon.go
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@@ -179,9 +179,9 @@ func (taxon *Taxon) IPath() iter.Seq[*Taxon] {
}
}
// Path returns a slice of TaxNode representing the path from the current Taxon
// to the root Taxon in the associated Taxonomy. It collects all the nodes in the path
// using the IPath method and returns them as a TaxonSlice.
// Path returns a slice of TaxNode representing the path from the current Taxon.
// The first element of the slice is the current Taxon, and the last element is the
// to the root Taxon in the associated Taxonomy.
//
// Returns:
// - A pointer to a TaxonSlice containing the TaxNode instances in the path
@@ -371,3 +371,11 @@ func (taxon *Taxon) MetadataStringValues() []string {
}
return values
}
func (taxon *Taxon) SameAs(other *Taxon) bool {
if taxon == nil || other == nil {
return false
}
return taxon.Taxonomy == other.Taxonomy && taxon.Node.id == other.Node.id
}