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Optimize memory for readers and writers

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This commit is contained in:
Eric Coissac
2024-08-05 10:48:28 +02:00
parent f83032e643
commit 886b5d9a96
11 changed files with 48 additions and 13 deletions
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4
pkg/obiformats/fastqseq_read.go
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@@ -310,7 +310,7 @@ func ReadFastq(reader io.Reader, options ...WithOption) (obiiter.IBioSequence, e
nworker := opt.ParallelWorkers()
buff := make([]byte, 1024*1024*1024)
buff := make([]byte, 1024*1024)
chkchan := ReadSeqFileChunk(
opt.Source(),
@@ -332,7 +332,7 @@ func ReadFastq(reader io.Reader, options ...WithOption) (obiiter.IBioSequence, e
out.WaitAndClose()
}()
newIter := out.SortBatches().Rebatch(opt.BatchSize())
newIter := out.SortBatches()
log.Debugln("Full file batch mode : ", opt.FullFileBatch())