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Optimize memory for readers and writers

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This commit is contained in:
Eric Coissac
2024-08-05 10:48:28 +02:00
parent f83032e643
commit 886b5d9a96
11 changed files with 48 additions and 13 deletions
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3
pkg/obiformats/fastseq_write_fasta.go
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@@ -126,7 +126,6 @@ func WriteFasta(iterator obiiter.IBioSequence,
options ...WithOption) (obiiter.IBioSequence, error) {
opt := MakeOptions(options)
iterator = iterator.Rebatch(opt.BatchSize())
file, _ = obiutils.CompressStream(file, opt.CompressedFile(), opt.CloseFile())
newIter := obiiter.MakeIBioSequence()
@@ -142,7 +141,7 @@ func WriteFasta(iterator obiiter.IBioSequence,
go func() {
newIter.WaitAndClose()
close(chunkchan)
log.Warnf("Writing fasta file done")
log.Debugf("Writing fasta file done")
}()
ff := func(iterator obiiter.IBioSequence) {