⬆️ version bump to v4.5

- Update obioptions.Version from "Release 4.4.29" to "/v/ Release v5"
- Update version.txt from 4.29 → .30
(automated by Makefile)
This commit is contained in:
Eric Coissac
2026-04-07 08:36:50 +02:00
parent 670edc1958
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392 changed files with 18875 additions and 141 deletions
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# Obilib Module Overview
The `obilua` package provides Lua bindings for core OBIL (Ontology-Based Information Library) functionality, enabling scripting and extension of ontological data processing within a Lua environment.
## Core Components
- **`RegisterObilib(luaState *lua.LState)`**
Main registration function; initializes and exposes OBIL modules to a given Lua state.
- **`RegisterObiSeq(luaState *lua.LState)`**
Registers sequence-related operations (e.g., parsing, manipulation, and analysis of biological sequences like DNA/RNA/proteins).
- **`RegisterObiTaxonomy(luaState *lua.LState)`**
Registers taxonomy utilities (e.g., classification, lineage lookup, and hierarchical navigation of taxonomic trees).
## Semantic Capabilities
- Enables *semantic querying* over structured biological data via Lua scripts.
- Supports integration of ontological reasoning (e.g., using GO, NCBI Taxonomy) in dynamic workflows.
- Provides extensibility: new modules can be added by implementing `Register*` functions.
## Design Principles
- Minimal, non-intrusive API: only exposes essential high-level operations.
- Leverages `gopher-lua` for seamless interoperability between Go and Lua.
## Use Cases
- Custom annotation pipelines in bioinformatics.
- Interactive exploration of ontologies and sequences (e.g., via REPL or embedded Lua engines).