⬆️ version bump to v4.5

- Update obioptions.Version from "Release 4.4.29" to "/v/ Release v5"
- Update version.txt from 4.29 → .30
(automated by Makefile)
This commit is contained in:
Eric Coissac
2026-04-07 08:36:50 +02:00
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# `obitable`: Row-Oriented Data Table for Biological Sequences
The `obitable` package provides a lightweight, row-oriented data table structure (`Table`) for managing biological sequence metadata in Go.
- **Core Types**:
- `Header`: An ordered column list (alias for `stl4go.Ordered`).
- `Row`: A flexible map from column names to values (`map[string]interface{}`).
- `Table`: Holds schema info via `ColType` (column → Go type) and a slice of rows.
- **Row Generators**:
- `RowFromMap`: Wraps a generic map into a callable row accessor, substituting missing keys with `navalue`.
- `RowFromBioSeq`: Specialized generator for `obiseq.BioSequence` objects, mapping standard fields (`id`, `sequence`, etc.) and annotations dynamically.
- **Semantic Features**:
- Supports heterogeneous data types per column (via `reflect.Type`).
- Enables uniform access to sequence metadata and custom annotations.
- Designed for interoperability with `obiseq` (OBITools4s biological sequence module).
- Facilitates lazy or on-demand row construction—ideal for streaming pipelines.
- **Use Cases**:
- Converting sequence datasets into tabular formats (e.g., for export, filtering).
- Building intermediate representations in bioinformatics workflows.