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Change path of the obitools pkg

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Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65
This commit is contained in:
Eric Coissac
2023-11-29 12:14:37 +01:00
parent 72ad84c2d4
commit 8d77cc4133
122 changed files with 1004 additions and 544 deletions
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10
pkg/obitools/obidistribute/distribute.go
View File

@@ -3,13 +3,13 @@ package obidistribute
import (
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiformats"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconvert"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiformats"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiiter"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obiconvert"
)
func DistributeSequence(sequences obiiter.IBioSequence) {
func CLIDistributeSequence(sequences obiiter.IBioSequence) {
opts := make([]obiformats.WithOption, 0, 10)

9
pkg/obitools/obidistribute/options.go
View File

@@ -6,8 +6,8 @@ import (
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconvert"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obiconvert"
"github.com/DavidGamba/go-getoptions"
)
@@ -37,7 +37,7 @@ func DistributeOptionSet(options *getoptions.GetOpt) {
options.Alias("d"),
options.Description("The name of a tag annotating the sequences. "+
"The name must corresponds to a string, a integer or a boolean value. "+
"That value will be used to dispatch sequences amoong the different directory " +
"That value will be used to dispatch sequences amoong the different directory "+
"in conjunction with the -c|--classifier options"))
options.StringVar(&_NAValue, "na-value", _NAValue,
@@ -66,11 +66,10 @@ func CLIAppendSequences() bool {
return _append
}
func CLISequenceClassifier() *obiseq.BioSequenceClassifier {
switch {
case _SequenceClassifierTag != "":
return obiseq.DualAnnotationClassifier(_SequenceClassifierTag,_DirectoryTag, _NAValue)
return obiseq.DualAnnotationClassifier(_SequenceClassifierTag, _DirectoryTag, _NAValue)
case _BatchCount > 0:
return obiseq.RotateClassifier(_BatchCount)
case _HashSize > 0: