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debug of obimultiplex

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Former-commit-id: 1cf276840feb9d6135d96bd1bf63627d3085ae6e
This commit is contained in:
Eric Coissac
2024-06-18 23:38:33 +02:00
parent 44533fb61e
commit a812fe8b72
9 changed files with 468 additions and 50 deletions
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52
pkg/obiformats/ngsfilter_read.go
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@@ -400,6 +400,58 @@ var library_parameter = map[string]func(library *obingslibrary.NGSLibrary, value
log.Fatalln("Invalid value for @reverse_primer_error parameter")
}
},
"tag_indels": func(library *obingslibrary.NGSLibrary, values ...string) {
switch len(values) {
case 0:
log.Fatalln("Missing value for @tag_indels parameter")
case 1:
indels, err := strconv.Atoi(values[0])
if err != nil {
log.Fatalf("Invalid value %s for @tag_indels parameter", values[0])
}
library.SetTagIndels(indels)
case 2:
indels, err := strconv.Atoi(values[1])
if err != nil {
log.Fatalf("Invalid value %s for @tag_indels parameter", values[1])
}
library.SetTagIndelsFor(values[0], indels)
}
},
"forward_tag_indels": func(library *obingslibrary.NGSLibrary, values ...string) {
switch len(values) {
case 0:
log.Fatalln("Missing value for @forward_tag_indels parameter")
case 1:
indels, err := strconv.Atoi(values[0])
if err != nil {
log.Fatalf("Invalid value %s for @forward_tag_indels parameter", values[0])
}
library.SetForwardTagIndels(indels)
default:
log.Fatalln("Invalid value for @forward_tag_indels parameter")
}
},
"reverse_tag_indels": func(library *obingslibrary.NGSLibrary, values ...string) {
switch len(values) {
case 0:
log.Fatalln("Missing value for @reverse_tag_indels parameter")
case 1:
indels, err := strconv.Atoi(values[0])
if err != nil {
log.Fatalf("Invalid value %s for @reverse_tag_indels parameter", values[0])
}
library.SetReverseTagIndels(indels)
default:
log.Fatalln("Invalid value for @reverse_tag_indels parameter")
}
},
"indels": func(library *obingslibrary.NGSLibrary, values ...string) {
switch len(values) {
case 0: