obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-12-08 16:50:27 +00:00
Code Issues Packages Projects Releases Wiki Activity

Patch module name from oa2 to obitools

Browse Source
This commit is contained in:
Eric Coissac
2022-01-13 23:43:01 +01:00
parent f53bf1b804
commit b9b9c0f179
47 changed files with 82 additions and 401 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
pkg/obitools/obiconvert/sequence_reader.go
View File

@@ -6,8 +6,8 @@ import (
"path/filepath"
"strings"
"git.metabarcoding.org/lecasofts/go/oa2/pkg/obiformats"
"git.metabarcoding.org/lecasofts/go/oa2/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiformats"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
)
func __expand_list_of_files__(check_ext bool, filenames ...string) ([]string, error) {

4
pkg/obitools/obiconvert/sequence_writer.go
View File

@@ -3,8 +3,8 @@ package obiconvert
import (
"log"
"git.metabarcoding.org/lecasofts/go/oa2/pkg/obiformats"
"git.metabarcoding.org/lecasofts/go/oa2/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiformats"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
)
func WriteBioSequences(iterator obiseq.IBioSequence, filenames ...string) error {

2
pkg/obitools/obifind/iterator.go
View File

@@ -4,7 +4,7 @@ import (
"bytes"
"fmt"
"git.metabarcoding.org/lecasofts/go/oa2/pkg/obitax"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitax"
)
func IFilterRankRestriction() func(*obitax.ITaxonSet) *obitax.ITaxonSet {

4
pkg/obitools/obifind/options.go
View File

@@ -3,8 +3,8 @@ package obifind
import (
"errors"
"git.metabarcoding.org/lecasofts/go/oa2/pkg/obiformats/ncbitaxdump"
"git.metabarcoding.org/lecasofts/go/oa2/pkg/obitax"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiformats/ncbitaxdump"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitax"
"github.com/DavidGamba/go-getoptions"
)

4
pkg/obitools/obipairing/options.go
View File

@@ -1,8 +1,8 @@
package obipairing
import (
"git.metabarcoding.org/lecasofts/go/oa2/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/oa2/pkg/obitools/obiconvert"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconvert"
"github.com/DavidGamba/go-getoptions"
)

4
pkg/obitools/obipairing/pairing.go
View File

@@ -6,8 +6,8 @@ import (
"os"
"time"
"git.metabarcoding.org/lecasofts/go/oa2/pkg/obialign"
"git.metabarcoding.org/lecasofts/go/oa2/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obialign"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"github.com/schollz/progressbar/v3"
)

4
pkg/obitools/obipcr/options.go
View File

@@ -3,8 +3,8 @@ package obipcr
import (
"log"
"git.metabarcoding.org/lecasofts/go/oa2/pkg/obiapat"
"git.metabarcoding.org/lecasofts/go/oa2/pkg/obitools/obiconvert"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiapat"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconvert"
"github.com/DavidGamba/go-getoptions"
)

4
pkg/obitools/obipcr/pcr.go
View File

@@ -1,8 +1,8 @@
package obipcr
import (
"git.metabarcoding.org/lecasofts/go/oa2/pkg/obiapat"
"git.metabarcoding.org/lecasofts/go/oa2/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiapat"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
)
func PCR(iterator obiseq.IBioSequenceBatch) (obiseq.IBioSequence, error) {