Reduce redundante call to bytes.ToLower and substitute the last call by an home made version doing the conversion in place

Former-commit-id: d9ea22f649d97be352f8dbb37acc1495df830118
This commit is contained in:
2023-03-28 11:43:04 +07:00
parent e8a8f746d3
commit bc82422bc5
6 changed files with 18 additions and 10 deletions

View File

@@ -1,7 +1,6 @@
package obiformats
import (
"bytes"
"compress/gzip"
"encoding/csv"
"fmt"
@@ -70,7 +69,7 @@ func __read_ecopcr_bioseq__(file *__ecopcr_file__) (*obiseq.BioSequence, error)
comment = strings.TrimSpace(record[19])
}
bseq := obiseq.NewBioSequence(name, bytes.ToLower(sequence), comment)
bseq := obiseq.NewBioSequence(name, sequence, comment)
annotation := bseq.Annotations()
annotation["ac"] = name

View File

@@ -141,10 +141,10 @@ func _ParseEmblFile(source string, input <-chan _FileChunk, out obiiter.IBioSequ
}
case line == "//":
sequence := obiseq.NewBioSequence(id,
bytes.ToLower(seqBytes.Bytes()),
seqBytes.Bytes(),
defBytes.String())
sequence.SetSource(source)
sequence.SetFeatures(featBytes.Bytes())
annot := sequence.Annotations()

View File

@@ -7,7 +7,6 @@ package obiformats
import "C"
import (
"bytes"
"fmt"
"os"
"path"
@@ -42,7 +41,7 @@ func _FastseqReader(source string,
comment = ""
}
rep := obiseq.NewBioSequence(name, bytes.ToLower(sequence), comment)
rep := obiseq.NewBioSequence(name, sequence, comment)
rep.SetSource(source)
if s.qual.l > C.ulong(0) {
cquality := unsafe.Slice(s.qual.s, C.int(s.qual.l))

View File

@@ -69,7 +69,7 @@ func _ParseGenbankFile(source string,
case line == "//":
log.Debugln("Total lines := ", nl)
sequence := obiseq.NewBioSequence(id,
bytes.ToLower(seqBytes.Bytes()),
seqBytes.Bytes(),
defBytes.String())
sequence.SetSource(source)
state = inHeader