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Replace Rebatch with RebatchBySize using default batch parameters

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Replace calls to Rebatch(size) with RebatchBySize(obidefault.BatchMem(), obidefault.BatchSizeMax()) in batchiterator.go, fragment.go, and obirefidx.go to ensure consistent use of default memory and size limits for batch rebatching.
This commit is contained in:
Eric Coissac
2026-03-13 15:13:56 +01:00
parent 1e1f575d1c
commit c188580aac
3 changed files with 5 additions and 4 deletions
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pkg/obitools/obirefidx/obirefidx.go
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@@ -291,5 +291,5 @@ func IndexReferenceDB(iterator obiiter.IBioSequence) obiiter.IBioSequence {
go f()
}
return indexed.Rebatch(obidefault.BatchSize())
return indexed.RebatchBySize(obidefault.BatchMem(), obidefault.BatchSizeMax())
}