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Merge pull request #63 from metabarcoding/push-vypwrurrsxuk

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obicsv bug with stat on value map fields
This commit is contained in:
coissac
2025-11-21 14:04:34 +01:00
committed by GitHub
parent 961abcea7b 86e60aedd0
commit c1b9503ca6
3 changed files with 8 additions and 2 deletions
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2
pkg/obioptions/version.go
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@@ -8,7 +8,7 @@ import (
// corresponds to the last commit, and not the one when the file will be // corresponds to the last commit, and not the one when the file will be
// commited // commited
var _Commit = "27204d5" var _Commit = "961abce"
var _Version = "Release 4.4.0" var _Version = "Release 4.4.0"
// Version returns the version of the obitools package. // Version returns the version of the obitools package.

2
pkg/obiseq/attributes.go
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@@ -21,7 +21,7 @@ func (s *BioSequence) AttributeKeys(skip_container, skip_definition bool) obiuti
keys := obiutils.MakeSet[string]() keys := obiutils.MakeSet[string]()
for k, v := range s.Annotations() { for k, v := range s.Annotations() {
if !((skip_container && obiutils.IsAContainer(v)) || if !((skip_container && (obiutils.IsAContainer(v) || IsStatsOnValues(v))) ||
(skip_definition && k == "definition")) { (skip_definition && k == "definition")) {
keys.Add(k) keys.Add(k)
} }

6
pkg/obiseq/merge.go
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@@ -76,6 +76,12 @@ func MapAsStatsOnValues(m map[string]int) *StatsOnValues {
return &v return &v
} }
func IsStatsOnValues(value interface{}) bool {
_, ok := value.(*StatsOnValues)
return ok
}
func (sov *StatsOnValues) RLock() { func (sov *StatsOnValues) RLock() {
sov.lock.RLock() sov.lock.RLock()
} }