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First fonctionnal version with fixed tag length and strict matching

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Former-commit-id: 5affee2c7c66dd1da5b17c2d1ea64f44db76df50
This commit is contained in:
Eric Coissac
2024-06-04 21:46:09 +02:00
parent a0a9fb461c
commit c8ad96f5e6
3 changed files with 162 additions and 45 deletions
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7
pkg/obitools/obimultiplex2/demultiplex.go
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@@ -31,16 +31,17 @@ func IExtractBarcode(iterator obiiter.IBioSequence) (obiiter.IBioSequence, error
worker := ngsfilter.ExtractMultiBarcodeSliceWorker(opts...)
newIter := iterator.MakeISliceWorker(worker, false)
out := newIter
if !CLIConservedErrors() {
log.Infoln("Discards unassigned sequences")
newIter = newIter.FilterOn(obiseq.HasAttribute("demultiplex_error").Not(), obioptions.CLIBatchSize())
out = out.FilterOn(obiseq.HasAttribute("demultiplex_error").Not(), obioptions.CLIBatchSize())
}
var unidentified obiiter.IBioSequence
if CLIUnidentifiedFileName() != "" {
log.Printf("Unassigned sequences saved in file: %s\n", CLIUnidentifiedFileName())
unidentified, newIter = newIter.DivideOn(obiseq.HasAttribute("demultiplex_error"),
unidentified, out = newIter.DivideOn(obiseq.HasAttribute("demultiplex_error"),
obioptions.CLIBatchSize())
go func() {
@@ -56,5 +57,5 @@ func IExtractBarcode(iterator obiiter.IBioSequence) (obiiter.IBioSequence, error
}
log.Printf("Sequence demultiplexing using %d workers\n", obioptions.CLIParallelWorkers())
return newIter, nil
return out, nil
}