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new --version option and qualities method in obiscript

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Former-commit-id: 7b0ce2901785d5c7494dec3a7a95d1fc5dc4a52b
This commit is contained in:
Eric Coissac
2024-04-13 12:40:43 +02:00
parent 0a2ea962db
commit cb35612a6c
5 changed files with 97 additions and 5 deletions
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24
pkg/obilua/obiseq.go
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@@ -48,6 +48,7 @@ func newObiSeq(luaState *lua.LState) int {
var bioSequenceMethods = map[string]lua.LGFunction{
"id": bioSequenceGetSetId,
"sequence": bioSequenceGetSetSequence,
"qualities": bioSequenceGetSetQualities,
"definition": bioSequenceGetSetDefinition,
"count": bioSequenceGetSetCount,
"taxid": bioSequenceGetSetTaxid,
@@ -99,6 +100,29 @@ func bioSequenceGetSetSequence(luaState *lua.LState) int {
return 1
}
func bioSequenceGetSetQualities(luaState *lua.LState) int {
s := checkBioSequence(luaState)
if luaState.GetTop() == 2 {
ud := luaState.CheckAny(2)
//
// Perhaps the code needs some type checking on ud.Value
// It's a first test
//
if v, ok := ud.(*lua.LTable); ok {
s.SetQualities(Table2ByteSlice(luaState, v))
return 0
}
}
value := []byte(s.Qualities())
pushInterfaceToLua(luaState, value)
return 1
}
func bioSequenceGetSetDefinition(luaState *lua.LState) int {
s := checkBioSequence(luaState)
if luaState.GetTop() == 2 {