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rename goutils to obiutils

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Former-commit-id: 2147f53db972bba571dfdae30c51b62d3e69cec5
This commit is contained in:
Eric Coissac
2023-03-24 10:25:12 +07:00
parent 42aae88520
commit d5e84ec676
33 changed files with 245 additions and 156 deletions
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8
pkg/obiapat/pattern.go
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@@ -13,9 +13,9 @@ import (
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/goutils"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obialign"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiutils"
)
var _MaxPatLen = int(C.MAX_PAT_LEN)
@@ -355,8 +355,8 @@ func (pattern ApatPattern) BestMatch(sequence ApatSequence, begin, length int) (
start = best[0] - nerr
end = best[0] + int(pattern.pointer.pointer.patlen) + nerr
start = goutils.MaxInt(start, 0)
end = goutils.MinInt(end, sequence.Len())
start = obiutils.MaxInt(start, 0)
end = obiutils.MinInt(end, sequence.Len())
cpattern := (*[1 << 30]byte)(unsafe.Pointer(pattern.pointer.pointer.cpat))
cseq := (*[1 << 30]byte)(unsafe.Pointer(sequence.pointer.pointer.cseq))
@@ -374,7 +374,7 @@ func (pattern ApatPattern) BestMatch(sequence ApatSequence, begin, length int) (
nerr = lali - score
start = best[0] + int(pattern.pointer.pointer.patlen) - lali
end = start + lali
end = start + lali
log.Debugln("results", score, lali, start, nerr)
return
}