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rename goutils to obiutils

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Former-commit-id: 2147f53db972bba571dfdae30c51b62d3e69cec5
This commit is contained in:
Eric Coissac
2023-03-24 10:25:12 +07:00
parent 42aae88520
commit d5e84ec676
33 changed files with 245 additions and 156 deletions
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6
pkg/obiformats/csv_writer.go
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@@ -9,9 +9,9 @@ import (
"sync"
"time"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/goutils"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiutils"
log "github.com/sirupsen/logrus"
)
@@ -52,7 +52,7 @@ func CSVRecord(sequence *obiseq.BioSequence, opt Options) []string {
value = opt.CSVNAValue()
}
svalue, _ := goutils.InterfaceToString(value)
svalue, _ := obiutils.InterfaceToString(value)
record = append(record, svalue)
}
@@ -132,7 +132,7 @@ func WriteCSV(iterator obiiter.IBioSequence,
options ...WithOption) (obiiter.IBioSequence, error) {
opt := MakeOptions(options)
file, _ = goutils.CompressStream(file, opt.CompressedFile(), opt.CloseFile())
file, _ = obiutils.CompressStream(file, opt.CompressedFile(), opt.CloseFile())
newIter := obiiter.MakeIBioSequence()