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rename goutils to obiutils

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Former-commit-id: 2147f53db972bba571dfdae30c51b62d3e69cec5
This commit is contained in:
Eric Coissac
2023-03-24 10:25:12 +07:00
parent 42aae88520
commit d5e84ec676
33 changed files with 245 additions and 156 deletions
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4
pkg/obiformats/fastseq_write_fastq.go
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@@ -10,9 +10,9 @@ import (
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/goutils"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiutils"
)
func FormatFastq(seq *obiseq.BioSequence, quality_shift int, formater FormatHeader) string {
@@ -61,7 +61,7 @@ func WriteFastq(iterator obiiter.IBioSequence,
opt := MakeOptions(options)
file, _ = goutils.CompressStream(file, opt.CompressedFile(), opt.CloseFile())
file, _ = obiutils.CompressStream(file, opt.CompressedFile(), opt.CloseFile())
newIter := obiiter.MakeIBioSequence()