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rename goutils to obiutils

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Former-commit-id: 2147f53db972bba571dfdae30c51b62d3e69cec5
This commit is contained in:
Eric Coissac
2023-03-24 10:25:12 +07:00
parent 42aae88520
commit d5e84ec676
33 changed files with 245 additions and 156 deletions
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10
pkg/obitools/obiclean/obiclean.go
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@@ -4,10 +4,10 @@ import (
"fmt"
"os"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/goutils"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiutils"
"github.com/schollz/progressbar/v3"
log "github.com/sirupsen/logrus"
)
@@ -120,7 +120,7 @@ func HeadCount(sequence *obiseq.BioSequence) int {
value := 0
if ok {
value, err = goutils.InterfaceToInt(value)
value, err = obiutils.InterfaceToInt(value)
if err != nil {
log.Panic("obiclean_headcount attribute of sequence %s must be an integer value not : %v", sequence.Id(), ivalue)
}
@@ -136,7 +136,7 @@ func InternalCount(sequence *obiseq.BioSequence) int {
value := 0
if ok {
value, err = goutils.InterfaceToInt(value)
value, err = obiutils.InterfaceToInt(value)
if err != nil {
log.Panic("obiclean_internalcount attribute of sequence %s must be an integer value not : %v", sequence.Id(), ivalue)
}
@@ -152,7 +152,7 @@ func SingletonCount(sequence *obiseq.BioSequence) int {
value := 0
if ok {
value, err = goutils.InterfaceToInt(value)
value, err = obiutils.InterfaceToInt(value)
if err != nil {
log.Panic("obiclean_samplecount attribute of sequence %s must be an integer value not : %v", sequence.Id(), ivalue)
}
@@ -271,7 +271,7 @@ func Weight(sequence *obiseq.BioSequence) map[string]int {
case map[string]interface{}:
weight = make(map[string]int)
for k, v := range iobistatus {
weight[k], err = goutils.InterfaceToInt(v)
weight[k], err = obiutils.InterfaceToInt(v)
if err != nil {
log.Panicf("Weight value %v cannnot be casted to an integer value\n", v)
}