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rename goutils to obiutils

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Former-commit-id: 2147f53db972bba571dfdae30c51b62d3e69cec5
This commit is contained in:
Eric Coissac
2023-03-24 10:25:12 +07:00
parent 42aae88520
commit d5e84ec676
33 changed files with 245 additions and 156 deletions
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6
pkg/obitools/obirefidx/obirefidx.go
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@@ -5,7 +5,6 @@ import (
"log"
"os"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/goutils"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obialign"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obikmer"
@@ -13,6 +12,7 @@ import (
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitax"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obifind"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiutils"
"github.com/schollz/progressbar/v3"
)
@@ -38,7 +38,7 @@ func IndexSequence(seqidx int,
// log.Println("Redone : ",r,"/",t,"(",w,")")
o := goutils.IntOrder(score)
o := obiutils.IntOrder(score)
current_taxid, err := taxo.Taxon(references[o[0]].Taxid())
current_score := score[o[0]]
@@ -121,7 +121,7 @@ func IndexReferenceDB(iterator obiiter.IBioSequence) obiiter.IBioSequence {
indexed := obiiter.MakeIBioSequence()
go func() {
for i := 0; i < len(references); i += 10 {
limits <- [2]int{i, goutils.MinInt(i+10, len(references))}
limits <- [2]int{i, obiutils.MinInt(i+10, len(references))}
}
close(limits)
}()