Small change in parallelisation tuning

Former-commit-id: 3fe2495b7fd86a0ba47dd87907323a457bae481a
This commit is contained in:
2023-04-05 14:15:47 +02:00
parent 2e7fc9a589
commit d70bb45f3f
5 changed files with 25 additions and 9 deletions

View File

@@ -90,7 +90,7 @@ func CLIReadBioSequences(filenames ...string) (obiiter.IBioSequence, error) {
opts = append(opts, obiformats.OptionsFastSeqHeaderParser(obiformats.ParseGuessedFastSeqHeader))
}
nworkers := obioptions.CLIParallelWorkers()
nworkers := obioptions.CLIReadParallelWorkers()
if nworkers < 2 {
nworkers = 2
}

View File

@@ -56,5 +56,5 @@ func IExtractBarcode(iterator obiiter.IBioSequence) (obiiter.IBioSequence, error
}
log.Printf("Sequence demultiplexing using %d workers\n", obioptions.CLIParallelWorkers())
return newIter.Speed("Demultiplexing"), nil
return newIter, nil
}

View File

@@ -1,11 +1,12 @@
package obitag
import (
"log"
"math"
"strconv"
"strings"
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obialign"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obikmer"