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Swich to the system min and max functions and remove the version from obiutils

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Former-commit-id: 8c4558921b0d0c266b070f16e83813de6e6d4a0f
This commit is contained in:
Eric Coissac
2024-05-30 08:27:24 +02:00
parent 98b3bc2a8c
commit dd9307a4cd
12 changed files with 58 additions and 145 deletions
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4
pkg/obitools/obirefidx/obirefidx.go
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@@ -63,7 +63,7 @@ func IndexSequence(seqidx int,
if lca[order] == ancestor {
// nseq[i]++
if mini != -1 {
wordmin = obiutils.Max(sequence.Len(), references[order].Len()) - 3 - 4*mini
wordmin = max(sequence.Len(), references[order].Len()) - 3 - 4*mini
}
if cw[order] < wordmin {
@@ -189,7 +189,7 @@ func IndexReferenceDB(iterator obiiter.IBioSequence) obiiter.IBioSequence {
indexed := obiiter.MakeIBioSequence()
go func() {
for i := 0; i < len(references); i += 10 {
limits <- [2]int{i, obiutils.Min(i+10, len(references))}
limits <- [2]int{i, min(i+10, len(references))}
}
close(limits)
}()