obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-12-08 16:50:27 +00:00
Code Issues Packages Projects Releases Wiki Activity

Patch a bug in Subsequence and adds few unit tests.

Browse Source 
Former-commit-id: caddc9ad6523e4ef02899bfe83cc8681ef674383
This commit is contained in:
Eric Coissac
2023-11-08 10:16:34 +02:00
parent 8f96517f3c
commit dedf125f6e
8 changed files with 186 additions and 44 deletions
Download Patch File Download Diff File Expand all files Collapse all files

36
pkg/obiseq/biosequence_test.go
View File

@@ -94,6 +94,42 @@ func TestNewBioSequence(t *testing.T) {
}
}
// TestNewBioSequenceWithQualities tests the NewBioSequenceWithQualities function.
//
// It tests that the BioSequence object is created with the correct id, sequence,
// definition, and qualities.
// Parameters:
// - t: A pointer to a testing.T object.
// Return type: None.
func TestNewBioSequenceWithQualities(t *testing.T) {
id := "123"
sequence := []byte("ATGC")
definition := "DNA sequence"
qualities := []byte("1234")
bs := NewBioSequenceWithQualities(id, sequence, definition, qualities)
// Test that the BioSequence object is created with the correct id
if bs.Id() != id {
t.Errorf("Expected id to be %s, but got %s", id, bs.Id())
}
// Test that the BioSequence object is created with the correct sequence
if string(bs.Sequence()) != string(sequence) {
t.Errorf("Expected sequence to be %s, but got %s", string(sequence), string(bs.Sequence()))
}
// Test that the BioSequence object is created with the correct definition
if bs.Definition() != definition {
t.Errorf("Expected definition to be %s, but got %s", definition, bs.Definition())
}
// Test that the BioSequence object is created with the correct qualities
if string(bs.Qualities()) != string(qualities) {
t.Errorf("Expected qualities to be %s, but got %s", string(qualities), string(bs.Qualities()))
}
}
// TestBioSequence_Recycle tests the Recycle method of the BioSequence struct.
//
// Test case 1: Recycle a BioSequence object with non-nil slices and annotations.