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Reduce memory allocation events

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Former-commit-id: fbdb2afc857b02adc2593e2278d3bd838e99b0b2
This commit is contained in:
Eric Coissac
2024-06-22 21:01:53 +02:00
parent 54a138196c
commit e6b87ecd02
19 changed files with 166 additions and 75 deletions
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3
pkg/obitools/obitagpcr/pcrtag.go
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@@ -37,6 +37,7 @@ func IPCRTagPESequencesBatch(iterator obiiter.IBioSequence,
f := func(iterator obiiter.IBioSequence, wid int) {
arena := obialign.MakePEAlignArena(150, 150)
var err error
shifts := make(map[int]int)
for iterator.Next() {
batch := iterator.Get()
@@ -46,7 +47,7 @@ func IPCRTagPESequencesBatch(iterator obiiter.IBioSequence,
A.Copy(), B.ReverseComplement(false),
gap, scale,
delta, minOverlap, minIdentity, withStats, true,
fastAlign, fastScoreRel, arena,
fastAlign, fastScoreRel, arena, &shifts,
)
consensus, err = ngsfilter.ExtractBarcode(consensus, true)