obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2026-02-03 06:40:33 +00:00
Code Issues Packages Projects Releases Wiki Activity

Some code refactoring, a new version of obiuniq more efficient in memory and a first make file allowing to build obitools

Browse Source
This commit is contained in:
Eric Coissac
2022-02-24 07:08:40 +01:00
parent 2e7c1834b0
commit eaf65fbcce
39 changed files with 1225 additions and 241 deletions
Download Patch File Download Diff File Expand all files Collapse all files

5
pkg/obitools/obimultiplex/demultiplex.go
View File

@@ -3,13 +3,14 @@ package obimultiplex
import (
"log"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obingslibrary"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconvert"
)
func IExtractBarcodeBatches(iterator obiseq.IBioSequenceBatch) (obiseq.IBioSequenceBatch, error) {
func IExtractBarcodeBatches(iterator obiiter.IBioSequenceBatch) (obiiter.IBioSequenceBatch, error) {
opts := make([]obingslibrary.WithOption, 0, 10)
@@ -36,7 +37,7 @@ func IExtractBarcodeBatches(iterator obiseq.IBioSequenceBatch) (obiseq.IBioSeque
newIter = newIter.Rebatch(obioptions.CLIBatchSize())
}
var unidentified obiseq.IBioSequenceBatch
var unidentified obiiter.IBioSequenceBatch
if CLIUnidentifiedFileName() != "" {
log.Printf("Unassigned sequences saved in file: %s\n", CLIUnidentifiedFileName())
unidentified, newIter = newIter.DivideOn(obiseq.HasAttribute("demultiplex_error"),