First commit

cmd/obitools/obifind/main.go

@@ -0,0 +1,68 @@
+package main
+
+import (
+	"fmt"
+	"os"
+
+	"git.metabarcoding.org/lecasofts/go/oa2/pkg/obioptions"
+	"git.metabarcoding.org/lecasofts/go/oa2/pkg/obitools/obifind"
+)
+
+func main() {
+	option_parser := obioptions.GenerateOptionParser(obifind.OptionSet)
+
+	_, args, _ := option_parser(os.Args)
+
+	//prof, _ := os.Create("obifind.prof")
+	//pprof.StartCPUProfile(prof)
+
+	restrictions, err := obifind.ITaxonRestrictions()
+	if err != nil {
+		fmt.Printf("%+v", err)
+	}
+
+	switch {
+	case obifind.RequestsPathForTaxid() >= 0:
+		taxonomy, err := obifind.LoadSelectedTaxonomy()
+		if err != nil {
+			fmt.Printf("%+v", err)
+		}
+
+		taxon, err := taxonomy.Taxon(obifind.RequestsPathForTaxid())
+
+		if err != nil {
+			fmt.Printf("%+v", err)
+		}
+
+		s, err := taxon.Path()
+
+		if err != nil {
+			fmt.Printf("%+v", err)
+		}
+
+		obifind.TaxonWriter(s.Iterator(),
+			fmt.Sprintf("path:%d", taxon.Taxid()))
+
+	case len(args) == 0:
+		taxonomy, err := obifind.LoadSelectedTaxonomy()
+		if err != nil {
+			fmt.Printf("%+v", err)
+		}
+
+		obifind.TaxonWriter(restrictions(taxonomy.Iterator()), "")
+
+	default:
+		matcher, err := obifind.ITaxonNameMatcher()
+
+		if err != nil {
+			fmt.Printf("%+v", err)
+		}
+
+		for _, pattern := range args {
+			s := restrictions(matcher(pattern))
+			obifind.TaxonWriter(s, pattern)
+		}
+	}
+
+	//pprof.StopCPUProfile()
+}