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FastLCS with maxError=-1 is equivalent to FullLCS.

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This commit is contained in:
Eric Coissac
2022-11-16 09:57:36 +01:00
parent 4375dbd9bb
commit f674200a6e
3 changed files with 10 additions and 119 deletions
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4
pkg/obialign/fastlcs.go
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@@ -69,6 +69,10 @@ func FastLCSScore(seqA, seqB *obiseq.BioSequence, maxError int, buffer *[]uint64
lA, lB = lB, lA
}
if maxError == -1 {
maxError = lA*2
}
delta := lA - lB
// The difference of length is larger the maximum allowed errors