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Patch a bug in ngsfilter reading and sample matching

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This commit is contained in:
Eric Coissac
2022-09-28 14:29:19 +02:00
parent ebefa28cc0
commit fe5d8e3340
2 changed files with 6 additions and 5 deletions
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4
pkg/obiformats/ngsfilter_read.go
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@@ -54,8 +54,8 @@ func _parseMainNGSFilterTags(text string) obingslibrary.TagPair {
} }
return obingslibrary.TagPair{ return obingslibrary.TagPair{
Forward: tags[0], Forward: strings.ToLower(tags[0]),
Reverse: tags[1], Reverse: strings.ToLower(tags[1]),
} }
} }

7
pkg/obingslibrary/match.go
View File

@@ -3,9 +3,10 @@ package obingslibrary
import ( import (
"errors" "errors"
"fmt" "fmt"
log "github.com/sirupsen/logrus"
"strings" "strings"
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiapat" "git.metabarcoding.org/lecasofts/go/obitools/pkg/obiapat"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq" "git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
) )
@@ -110,7 +111,7 @@ func (marker *Marker) Match(sequence *obiseq.BioSequence) *DemultiplexMatch {
if len(match) > 0 { if len(match) > 0 {
sseq := sequence.String() sseq := sequence.String()
direct := sseq[match[0][0]:match[0][1]] direct := sseq[match[0][0]:match[0][1]]
ftag := sseq[(match[0][0] - marker.taglength):match[0][0]] ftag := strings.ToLower(sseq[(match[0][0] - marker.taglength):match[0][0]])
m := DemultiplexMatch{ m := DemultiplexMatch{
ForwardMatch: direct, ForwardMatch: direct,
@@ -193,7 +194,7 @@ func (marker *Marker) Match(sequence *obiseq.BioSequence) *DemultiplexMatch {
} else { } else {
ftag = ftag.ReverseComplement(true) ftag = ftag.ReverseComplement(true)
sftag = ftag.String() sftag = strings.ToLower(ftag.String())
} }
m.ForwardMatch = direct.String() m.ForwardMatch = direct.String()