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Code reefactoring

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This commit is contained in:
Eric Coissac
2022-01-14 16:10:19 +01:00
parent 45a1765a03
commit ff40222902
13 changed files with 68 additions and 92 deletions
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13
pkg/obiformats/ncbitaxdump/read.go
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@@ -3,7 +3,6 @@ package ncbitaxdump
import (
"bufio"
"encoding/csv"
"errors"
"fmt"
"io"
"log"
@@ -95,8 +94,8 @@ func LoadNCBITaxDump(directory string, onlysn bool) (*obitax.Taxonomy, error) {
nodefile, err := os.Open(path.Join(directory, "nodes.dmp"))
if err != nil {
return nil, errors.New(fmt.Sprintf("Cannot open nodes file from '%s'",
directory))
return nil, fmt.Errorf("cannot open nodes file from '%s'",
directory)
}
defer nodefile.Close()
@@ -112,8 +111,8 @@ func LoadNCBITaxDump(directory string, onlysn bool) (*obitax.Taxonomy, error) {
namefile, nerr := os.Open(path.Join(directory, "names.dmp"))
if nerr != nil {
return nil, errors.New(fmt.Sprintf("Cannot open names file from '%s'",
directory))
return nil, fmt.Errorf("cannot open names file from '%s'",
directory)
}
defer namefile.Close()
@@ -128,8 +127,8 @@ func LoadNCBITaxDump(directory string, onlysn bool) (*obitax.Taxonomy, error) {
aliasfile, aerr := os.Open(path.Join(directory, "merged.dmp"))
if aerr != nil {
return nil, errors.New(fmt.Sprintf("Cannot open merged file from '%s'",
directory))
return nil, fmt.Errorf("cannot open merged file from '%s'",
directory)
}
defer aliasfile.Close()