obitools/obitools4
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3 Commits
Author SHA1 Message Date
Eric Coissac d6dd39f878 Introduce sequence roles and filtering logic 
Implement new data structures for corpus management, multi-match filtering, and barcode resolution.
 2026-11-03 22:50:02 +11:00
Eric Coissac ad065f6853 Introduce new sequence matching logic and corpus handling 
This commit introduces the core matching functionality, including parallel corpus loading, the `Corpus` data structure, and implementations for `matchNaive` and `matchApat`. It also defines new matching rules, variant handling, and comprehensive unit and integration tests to validate the new logic and parameter handling.
 2026-11-03 22:35:51 +11:00
Eric Coissac 56f5fe33d7 Implement strict word finding and sequence filtering 
This introduces new structures for defining sequence roles and constraints, core logic for strict word identification, and comprehensive unit tests to ensure accuracy and correct behavior.
 2026-11-03 22:34:10 +11:00