Commit Graph

Select branches

Hide Pull Requests

V4.3

blackboard

master

microasm

push-kzmrqmplznrn

push-mvpuxnxoyypu

push-pvunnvzrzslw

push-snmwxkwkqxrm

push-uotrstkymowq

push-uzpqqoqvpnxw

push-wpwqvsqsrpwz

push-yxknulsuqnvz

taxonomy

#101

#104

#105

#106

#107

#108

#109

#110

#112

#113

#115

#117

#118

#119

#50

#51

#53

#54

#56

#57

#58

#60

#61

#62

#63

#64

#65

#68

#70

#71

#72

#73

#74

#75

#76

#77

#78

#79

#80

#81

#82

#83

#84

#85

#86

#88

#89

#90

#91

#92

#93

#94

#95

#96

#97

#98

#99

Release_4.3.0

Release_4.4.0

Release_4.4.10

Release_4.4.11

Release_4.4.12

Release_4.4.13

Release_4.4.14

Release_4.4.15

Release_4.4.16

Release_4.4.17

Release_4.4.18

Release_4.4.19

Release_4.4.20

Release_4.4.21

Release_4.4.22

Release_4.4.23

Release_4.4.24

Release_4.4.25

Release_4.4.26

Release_4.4.27

Release_4.4.28

Release_4.4.29

Release_4.4.31

Release_4.4.32

Release_4.4.33

Release_4.4.34

Release_4.4.37

Release_4.4.38

Release_4.4.40

Release_4.4.41

Release_4.4.42

Release_4.4.43

Release_4.4.44

Release_4.4.45

Release_4.4.5

Release_4.4.6

Release_4.4.7

Release_4.4.8

Release_4.4.9

Mono Color

• 4dae7f708d Merge pull request #119 from metabarcoding/push-zrmnkuwsztxx master coissac 2026-06-02 15:02:42 +02:00
• 578445f38a Release 4.4.45 Release_4.4.45 Eric Coissac 2026-06-02 15:01:31 +02:00
• 2edb33ad08 fix: correct duplicated typos in GVal function names Eric Coissac 2026-06-02 14:59:48 +02:00
• b108d4978e Merge pull request #118 from metabarcoding/push-twztopkvxyop coissac 2026-06-02 14:42:00 +02:00
• e9210e28a3 Release 4.4.44 Release_4.4.44 Eric Coissac 2026-06-02 14:40:09 +02:00
• 13a93fce11 feat: add which_max and which_min to retrieve extreme element indices Eric Coissac 2026-06-02 14:37:39 +02:00
• 14064c919e fix(obiutils): correctly unwrap interface values in min/max Eric Coissac 2026-06-02 14:31:54 +02:00
• 1dfd68aa6d Merge pull request #117 from metabarcoding/push-wvlmzvomslzv coissac 2026-06-01 14:14:40 +02:00
• 930fe5f1ba Release 4.4.43 Release_4.4.43 Eric Coissac 2026-06-01 13:22:58 +02:00
• dcdaf9e372 feat: support map and slice types in OBI attributes Eric Coissac 2026-06-01 13:18:44 +02:00
• af7ae3d60c Correct Shannon entropy bias for canonical k-mers Eric Coissac 2026-05-17 14:52:31 +08:00
• cecf90fa40 feat: add min/max filtering and saturating subtraction utilities Eric Coissac 2026-05-14 20:57:05 +08:00
• a186bd1c92 fix: validate non-empty sequence IDs in FASTA and FASTQ writers Eric Coissac 2026-05-05 18:05:26 +02:00
• 46d60c1a44 Merge pull request #115 from metabarcoding/push-lkzqoskvyqtr coissac 2026-04-30 16:59:49 +02:00
• 6c4a6c697c [4.4.2] Enhanced taxonomy handling, input robustness & PCR tag validation Release_4.4.42 Eric Coissac 2026-04-30 16:57:45 +02:00
• 60b3753673 feat(obiconvert): add --raw-taxid option and refactor taxID formatting Eric Coissac 2026-04-30 16:44:28 +02:00
• 14e2840a2d [ngsfilter] Trim whitespace from primer and sample fields Eric Coissac 2026-04-30 08:14:10 +02:00
• 42910c7db9 🔧 Rename mismatch fields to error in pcrtag.go Eric Coissac 2026-04-29 15:29:21 +02:00
• 8b4cf677c6 [obitools] Add validation for paired files and config template support Eric Coissac 2026-04-29 15:01:09 +02:00
• 02765f154f Merge pull request #113 from metabarcoding/push-oxowomxlnlnx coissac 2026-04-16 15:04:55 +02:00
• 449544bd63 [obiseq] Quality validation and new map_summaries aggregation Release_4.4.41 Eric Coissac 2026-04-16 14:58:23 +02:00
• 434d2e5930 +feat: add support for map_summaries aggregation in obisummary Eric Coissac 2026-04-16 14:58:15 +02:00
• 7cb02ded69 Refactor: Extract utility function for string reversal Eric Coissac 2026-04-16 13:41:08 +02:00
• 6d469bd711 [obiseq] Add length validation for qualities in SetQualities, Take Qualites and Subsequence Eric Coissac 2026-04-14 14:48:41 +02:00
• 3d8e4a3a4e Merge pull request #112 from metabarcoding/push-yvqvqrxyktoz coissac 2026-04-14 14:49:08 +02:00
• 07d04a6967 Release 4.4.40 Release_4.4.40 Eric Coissac 2026-04-14 14:48:41 +02:00
• 03f251c365 [release] bump version to v4.4.39 Eric Coissac 2026-04-14 14:47:57 +02:00
• 5714fa6cd3 chore: bump version to 4.4.39 Eric Coissac 2026-04-13 18:30:16 +02:00
• f101625771 Merge pull request #110 from metabarcoding/push-tstsmnkomnoo coissac 2026-04-13 17:57:38 +02:00
• 4359b52eaf Release 4.4.38 Release_4.4.38 Eric Coissac 2026-04-13 17:57:00 +02:00
• da0c8b6f28 ♻️ refactor lua_push_interface and add json module Eric Coissac 2026-04-13 17:56:42 +02:00
• 841e5c9e2a Merge pull request #109 from metabarcoding/push-okvqknqnvmnl coissac 2026-04-13 17:19:41 +02:00
• e298daeef9 [v4.5] Bugfix for 3-base sequence handling and utility refactoring Release_4.4.37 Eric Coissac 2026-04-13 17:18:53 +02:00
• d9e6f67a6e chore: bump version to 4.4.36 Eric Coissac 2026-04-13 17:17:31 +02:00
• f036c7fa96 ⬆️ version bump to v4.5 Eric Coissac 2026-04-13 17:17:00 +02:00
• e33665e716 Refactor: Extract utility function for string reversal Eric Coissac 2026-04-13 17:16:55 +02:00
• c955a614ca chore: bump version to 4.4.35 Eric Coissac 2026-04-13 17:17:18 +02:00
• f19065261e We kept Eric Coissac 2026-04-13 16:27:14 +02:00
• 3e349e92e1 Merge pull request #104 from theo-krueger/master coissac 2026-04-13 16:39:08 +02:00
• a4ce24a418 Merge pull request #108 from metabarcoding/push-qlxnulxwokxo coissac 2026-04-13 16:27:43 +02:00
• 960ad1531d [4.4.34] HTTP client thread-safety and CI infrastructure updates Release_4.4.34 Eric Coissac 2026-04-13 16:27:14 +02:00
• 137f49d1d1 🔧 refactor(http): use thread-safe lazy-initialized HTTP client with connection pooling Eric Coissac 2026-04-13 16:27:01 +02:00
• 083a92e13d ⬆️ update GitHub Actions to latest versions Eric Coissac 2026-04-13 14:41:36 +02:00
• 67683435e8 Merge pull request #107 from metabarcoding/push-oyzynqqnturm coissac 2026-04-13 14:29:44 +02:00
• f32b29db4f Release 4.4.33 Release_4.4.33 Eric Coissac 2026-04-13 14:29:18 +02:00
• 10f49fe64b 📝 Clarify RegisterHTTP global registration intent Eric Coissac 2026-04-13 14:29:08 +02:00
• d257917748 Merge pull request #106 from metabarcoding/push-qoqotlnktvls coissac 2026-04-13 14:08:42 +02:00
• fec078c04c Release 4.4.32 Release_4.4.32 Eric Coissac 2026-04-13 14:08:16 +02:00
• a92393dd51 ⬆️ update go.mod dependencies and improve error messages Eric Coissac 2026-04-13 14:07:48 +02:00
• 7e76698490 Merge pull request #105 from metabarcoding/push-pnqoquxmpqpq coissac 2026-04-13 13:36:13 +02:00
• 64b0b32f61 Release 4.4.31 Release_4.4.31 Eric Coissac 2026-04-13 13:35:39 +02:00
• c8e6a218cb [release] bump version to v4.5 Eric Coissac 2026-04-13 13:33:30 +02:00
• 8c7017a99d ⬆️ version bump to v4.5 Eric Coissac 2026-04-07 08:36:50 +02:00
• c7816973a6 Bugfix: result of 0 4mers not caught if sequence length == 3 theo-krueger 2026-04-10 13:19:57 +02:00
• 670edc1958 docs: ajouter la documentation globale pour OBITools v4 Eric Coissac 2026-03-31 19:02:37 +02:00
• f92f285417 Merge pull request #101 from metabarcoding/push-klzowrsmmnyv coissac 2026-03-16 22:29:29 +01:00
• a786b58ed3 Dynamic Batch Flushing and Build Improvements Release_4.4.29 Eric Coissac 2026-03-16 22:06:51 +01:00
• a2b26712b2 refactor: replace fixed batch size with dynamic flushing based on count and memory Eric Coissac 2026-03-16 22:06:14 +01:00
• 1599abc9ad Merge pull request #99 from metabarcoding/push-urlyqwkrqypt coissac 2026-03-14 12:21:34 +01:00
• af213ab446 4.4.28: Static Linux Builds, Memory-Aware Batching, and Build Stability Release_4.4.28 Eric Coissac 2026-03-14 11:59:15 +01:00
• a60184c115 chore: bump version to 4.4.27 and add zlib-static dependency Eric Coissac 2026-03-14 11:43:42 +01:00
• f519c0ef7f 4.4.27: Static Linux builds, memory-aware batching, and build toolchain upgrades Release_4.4.27 push-wpwqvsqsrpwz Eric Coissac 2026-03-14 11:43:42 +01:00
• 585b024bf0 chore: update to Go 1.26 and refactor release workflow Eric Coissac 2026-03-13 19:30:37 +01:00
• 78e7933c6f 4.4.26: Static Linux Builds, Memory-Aware Batching & Cross-Compilation Fixes Release_4.4.26 push-yxknulsuqnvz Eric Coissac 2026-03-13 19:30:37 +01:00
• afc9ffda85 chore: bump version to 4.4.25 and fix CGO_CFLAGS for cross-compilation Eric Coissac 2026-03-13 19:24:26 +01:00
• 3cd4944fd8 4.4.25: Static Linux Builds, Memory-Aware Batching, and Build Stability Release_4.4.25 push-pvunnvzrzslw Eric Coissac 2026-03-13 19:24:26 +01:00
• fdd972bbd2 fix: add CGO_CFLAGS for static Linux builds and update go.work.sum Eric Coissac 2026-03-13 19:24:15 +01:00
• 76f595e1fe Merge pull request #95 from metabarcoding/push-kzmrqmplznrn coissac 2026-03-13 19:13:02 +01:00
• 1e1e5443e3 Merge branch 'master' into push-kzmrqmplznrn push-kzmrqmplznrn coissac 2026-03-13 19:12:49 +01:00
• 15d1f1fd80 Version 4.4.24 Release_4.4.24 Eric Coissac 2026-03-13 19:11:58 +01:00
• 8df2cbe22f Bump version to 4.4.23 and update release workflow Eric Coissac 2026-03-13 19:03:50 +01:00
• 58d685926b Merge pull request #94 from metabarcoding/push-lxxxlurqmqrt coissac 2026-03-13 19:04:15 +01:00
• e9f24426df 4.4.23: Memory-aware batching, static Linux builds, and build improvements Eric Coissac 2026-03-13 19:03:50 +01:00
• 2f7be10b5d Build improvements and Go version update Release_4.4.23 Eric Coissac 2026-03-13 19:03:22 +01:00
• 43125f9f5e feat: add progress bar to curl downloads in install script Eric Coissac 2026-03-13 16:40:53 +01:00
• c23368e929 update dependencies and Go toolchain to 1.25.0 Eric Coissac 2026-03-13 16:09:22 +01:00
• 6cb5a81685 Merge pull request #93 from metabarcoding/push-snmwxkwkqxrm coissac 2026-03-13 15:18:29 +01:00
• 94b0887069 Memory-aware Batching and Static Linux Builds push-snmwxkwkqxrm Eric Coissac 2026-03-13 15:16:41 +01:00
• c188580aac Replace Rebatch with RebatchBySize using default batch parameters Release_4.4.22 Eric Coissac 2026-03-13 15:13:56 +01:00
• 1e1f575d1c refactor: replace single batch size with min/max bounds and memory limits Eric Coissac 2026-03-13 15:07:31 +01:00
• 40769bf827 Add memory-based batching support Eric Coissac 2026-03-13 14:54:14 +01:00
• 74e6fcaf83 feat: add static linking for Linux builds using musl Eric Coissac 2026-03-13 14:26:17 +01:00
• 30ec8b1b63 Merge pull request #92 from metabarcoding/push-mvpuxnxoyypu coissac 2026-03-13 12:00:32 +01:00
• cdc72c5346 4.4.21: Parallel builds, robust installation, and rope-based parsing enhancements push-mvpuxnxoyypu Eric Coissac 2026-03-13 11:59:32 +01:00
• 82a9972be7 Add parallel compilation support and improve Makefile/install script robustness Release_4.4.21 Eric Coissac 2026-03-13 11:59:00 +01:00
• ff6e515b2a Merge pull request #91 from metabarcoding/push-uotrstkymowq coissac 2026-03-12 20:15:33 +01:00
• cd0c525f50 4.4.20: Rope-based parsing, improved release tooling, and bug fixes push-uotrstkymowq Eric Coissac 2026-03-12 20:06:24 +01:00
• abe935aa18 Add help target, colorize output, and improve release workflow Release_4.4.20 Eric Coissac 2026-03-12 19:20:45 +01:00
• 8dd32dc1bf Fix CompressStream call to use compressed variable Eric Coissac 2026-03-12 18:48:20 +01:00
• 6ee8750635 Replace SplitInTwo with LeftSplitInTwo/RightSplitInTwo for precise splitting Eric Coissac 2026-03-12 18:41:03 +01:00
• 8c318c480e replace fixed-size carry buffer with dynamic slice Eric Coissac 2026-03-11 17:05:34 +01:00
• 09fbc217d3 Add EMBL rope parsing support and improve sequence extraction Eric Coissac 2026-03-10 17:02:05 +01:00
• 3d2e205722 Refactor rope scanner and add FASTQ rope parser Eric Coissac 2026-03-10 16:46:53 +01:00
• 623116ab13 Add rope-based FASTA parsing and improve sequence handling Eric Coissac 2026-03-10 16:34:25 +01:00
• 1e4509cb63 Merge pull request #90 from metabarcoding/push-uzpqqoqvpnxw coissac 2026-03-10 15:53:08 +01:00
• b33d7705a8 Bump version to 4.4.19 push-uzpqqoqvpnxw Eric Coissac 2026-03-10 15:51:35 +01:00
• 1342c83db6 Use NewBioSequenceOwning to avoid unnecessary sequence copying Release_4.4.19 Eric Coissac 2026-03-10 15:51:28 +01:00
• b246025907 Optimize Fasta batch formatting Eric Coissac 2026-03-10 15:43:53 +01:00
• 761e0dbed3 Implémentation d'un parseur GenBank utilisant rope pour réduire l'usage de mémoire Eric Coissac 2026-03-10 15:35:23 +01:00
• a7ea47624b Optimisation du parsing des grandes séquences Eric Coissac 2026-03-10 14:20:10 +01:00