Eric Coissac
75bb635a6c
Implement Banded LCS calculation with scalar and SIMD support
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Introduces the BandedLCS function for efficient LCS scoring, supporting both scalar and SIMD implementations. Adds comprehensive unit tests, benchmarking utilities, and error handling for sequence constraints.
2026-11-03 09:28:46 +11:00
Eric Coissac
d17a9520b9
work on obiclean chimera detection
2025-10-20 17:29:47 +02:00
Eric Coissac
a812fe8b72
debug of obimultiplex
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Former-commit-id: 1cf276840feb9d6135d96bd1bf63627d3085ae6e
2024-06-18 23:38:33 +02:00
Eric Coissac
dd9307a4cd
Swich to the system min and max functions and remove the version from obiutils
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Former-commit-id: 8c4558921b0d0c266b070f16e83813de6e6d4a0f
2024-05-30 08:27:24 +02:00
Eric Coissac
017030bcce
Add obiminion first version
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Former-commit-id: aa5ace7bd4d2266333715fca7094d1c3cbbb5e6d
2024-05-14 08:16:12 +02:00
coissac
8d77cc4133
Change path of the obitools pkg
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Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65
2023-11-29 12:14:37 +01:00
coissac
2a11adb346
Add some doc and switch to the parallel gzip library
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Former-commit-id: 2c1187001f989ba3de5895f516d4c8b54d52a4c4
2023-08-25 14:36:38 +02:00
coissac
63dc67f344
add debuging log
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Former-commit-id: 7543d12838463bd9d9bcb365e5e6772b51daa5ec
2023-06-07 17:47:58 +02:00
coissac
d5e84ec676
rename goutils to obiutils
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Former-commit-id: 2147f53db972bba571dfdae30c51b62d3e69cec5
2023-03-24 10:25:12 +07:00
coissac
d09011fac2
Finalyse the obimultiplex with indels
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Former-commit-id: cef0ac39dac0e02d16d4bd321966a0f8a67f2c85
2023-03-21 22:01:02 +07:00
coissac
27d6c60e25
Add the possibility to look for patterns allowing indels.
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Former-commit-id: 0599c2b0ad16df086dbdb08e491503870d8904be
2023-03-20 15:28:24 +07:00
Eric Coissac
coissac