Introduces k-mer distance structures and SIMD implementation for LCS simulation.
Adds support for concurrent, read-only k-mer partners, implements data preparation for SIMD alignment, and adds comprehensive testing and benchmarking capabilities.
Adds support for Hamming distance, constrained k-mer generation, and optimized Longest Common Subsequence (LCS) calculations using scalar, batch, and SIMD methods.
This includes new methods for k-mer distance calculation, structures for k-mer constraints, and SIMD-based batch processing for LCS to improve performance and correctness.
Eric Coissac