11 Commits

Author	SHA1	Message	Date
Eric Coissac	7c4042df6b	introduce obidefault	2025-01-27 17:12:45 +01:00
Eric Coissac	795df34d1a	Changes to be committed: ... modified: cmd/obitools/obitag/main.go modified: cmd/obitools/obitag2/main.go modified: go.mod modified: go.sum modified: pkg/obiformats/ncbitaxdump/read.go modified: pkg/obioptions/version.go modified: pkg/obiseq/attributes.go modified: pkg/obiseq/taxonomy_lca.go modified: pkg/obiseq/taxonomy_methods.go modified: pkg/obiseq/taxonomy_predicate.go modified: pkg/obitax/inner.go modified: pkg/obitax/lca.go new file: pkg/obitax/taxid.go modified: pkg/obitax/taxon.go modified: pkg/obitax/taxonomy.go modified: pkg/obitax/taxonslice.go modified: pkg/obitools/obicleandb/obicleandb.go modified: pkg/obitools/obigrep/options.go modified: pkg/obitools/obilandmark/obilandmark.go modified: pkg/obitools/obilandmark/options.go modified: pkg/obitools/obirefidx/famlilyindexing.go modified: pkg/obitools/obirefidx/geomindexing.go modified: pkg/obitools/obirefidx/obirefidx.go modified: pkg/obitools/obirefidx/options.go modified: pkg/obitools/obitag/obigeomtag.go modified: pkg/obitools/obitag/obitag.go modified: pkg/obitools/obitag/options.go modified: pkg/obiutils/strings.go	2024-12-19 13:36:59 +01:00
Eric Coissac	1b1cd41fd3	Add some code refactoring from the blackboard branch	2024-08-02 12:35:46 +02:00
Eric Coissac	23758b00f6	Patch a bug in the embl reader and adds some doc ... Former-commit-id: 9b5f75fb14bcc3043da1647055279987a295d271	2024-01-31 15:43:02 +01:00
Eric Coissac	2caaa62485	Implements the kmeans++ algo to select the landmarks in the geometric method ... Former-commit-id: 732404a0dc6d7276e4e479dd2481aa4bd42d4ce5	2023-12-11 16:07:03 +01:00
Eric Coissac	0f8066d367	many changes ;-) ... Former-commit-id: cb4aea844e960e4af4dc673ebc8eec49a7d12b13	2023-12-05 15:28:29 +01:00
Eric Coissac	71bb5f3f89	Update options.go ... Former-commit-id: b794cb924596b069b13ac07de3291ba640289d7a	2023-12-01 16:38:02 +01:00
Eric Coissac	a0d77d8a60	Update obilandmark.go ... Former-commit-id: 6cb6da988fa8a0f87025f4da36173cfc4131e056	2023-12-01 16:37:32 +01:00
Eric Coissac	9bf006af93	A first prototype for the space of sequences ... Former-commit-id: 07dc6ef044b5b6a6fb45dc2acb01dffe71a96195	2023-08-27 14:58:55 +02:00
Eric Coissac	cbd42d5b30	Implements a parallel version of Kmeans ... Former-commit-id: 58ab24b9b274451e00eea0275249234e2c2ea09b	2023-08-26 01:26:40 +02:00
Eric Coissac	077f3b5bb5	first trial of obilandmark ... Former-commit-id: 00a50bdbf407b03dfdc385a848a536559f5966a5	2023-08-25 23:23:23 +02:00