obitools/obitools4
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8cc02aa9c162bae26968e7bed81349664484e728
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3 Commits
Author SHA1 Message Date
Eric Coissac 8cc02aa9c1 Refactor sequence processing for parallel loading and memory management 
This commit introduces significant changes to the sequence processing pipeline, implementing parallel loading, k-mer budget control, explicit memory management, and refined logic for pair evaluation and resolution.
 2026-11-03 22:53:54 +11:00
Eric Coissac d6dd39f878 Introduce sequence roles and filtering logic 
Implement new data structures for corpus management, multi-match filtering, and barcode resolution.
 2026-11-03 22:50:02 +11:00
Eric Coissac ad065f6853 Introduce new sequence matching logic and corpus handling 
This commit introduces the core matching functionality, including parallel corpus loading, the `Corpus` data structure, and implementations for `matchNaive` and `matchApat`. It also defines new matching rules, variant handling, and comprehensive unit and integration tests to validate the new logic and parameter handling.
 2026-11-03 22:35:51 +11:00