Commit Graph

16 Commits

Author SHA1 Message Date
Eric Coissac
9acb4a85a8 Refactoring of the default values 2025-01-24 18:09:59 +01:00
Eric Coissac
31bfc88eb9 Patch a bug on writing to stdout, and add clearer error on openning data files 2024-08-13 09:45:28 +02:00
Eric Coissac
38945d0a41 Adds the --template option to obimultiplex
Former-commit-id: 349e9f278abd6a6c258f31d99ea04853a79c62de
2024-05-31 11:34:06 +02:00
8d77cc4133 Change path of the obitools pkg
Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65
2023-11-29 12:14:37 +01:00
b3922c3896 Produce less weird crash on non existing files
Former-commit-id: 74bb27bd53c685be530632994bd2ba24c1f362e1
2023-03-07 17:34:25 +07:00
9811e440b8 Takes into account the option parsing errors
Former-commit-id: d0b3ed0b96a72f79f887df8fbc325427e63d7a73
2023-03-07 11:06:08 +07:00
ebb05fcdf7 code refactoring. Prefix function name having behaviour depending on command line option by the prefix CLI 2023-02-23 23:32:59 +01:00
6e36b22040 Normalise the managment of speed measure 2023-02-16 13:31:49 +01:00
526bf79c7f Patch for some lost of data during sequence writing 2023-02-08 13:14:26 +01:00
fa6853fca1 Comment profiling code 2023-01-31 22:39:34 +01:00
09fc426b67 Refactoring related to iterators 2022-11-16 17:13:03 +01:00
abcf02e488 Start to use leveled log 2022-02-24 12:14:52 +01:00
2e7c1834b0 Big change iin the data model, and a first version of obiuniq 2022-02-21 19:00:23 +01:00
98a4363d22 obimultiplex saves unassigned sequence 2022-02-01 23:25:19 +01:00
8dbda68746 Adds the command obimultiplex 2022-02-01 17:31:28 +01:00
4551df08b1 Adds a reader for NGS filter files and change some API for the apat library 2022-01-18 13:09:32 +01:00