Eric Coissac
c0ae49ef92
Ajout d'obilowmask_ref au fichier .gitignore
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Ajout du fichier obilowmask_ref dans le fichier .gitignore pour éviter qu'il ne soit suivi par Git.
2026-02-08 19:31:12 +01:00
Eric Coissac
db98ddb241
Fix super k-mer minimizer bijection and add validation test
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This commit addresses a bug in the super k-mer implementation where the minimizer bijection property was not properly enforced. The fix ensures that:
1. All k-mers within a super k-mer share the same minimizer
2. Identical super k-mer sequences have the same minimizer
The changes include:
- Fixing the super k-mer iteration logic to properly validate the minimizer bijection property
- Adding a comprehensive test suite (TestSuperKmerMinimizerBijection) that validates the intrinsic property of super k-mers
- Updating the .gitignore file to properly track relevant files
This resolves issues where the same sequence could be associated with different minimizers, violating the super k-mer definition.
2026-02-08 13:47:33 +01:00
Eric Coissac
4603d7973e
implementation de obilowmask
2025-11-18 15:30:20 +01:00
Eric Coissac
04f3af3e60
some renaming of functions
2025-08-06 15:54:50 -04:00
Eric Coissac
286e27d6ba
patch the scienctific_name tag name to "scientific_name"
2025-03-05 14:22:12 +01:00
Eric Coissac
6245d7f684
Changes to be committed:
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modified: .gitignore
2025-02-24 15:47:45 +01:00
Eric Coissac
15a058cf63
with all the sample files for tests
2025-02-19 15:27:38 +01:00
Eric Coissac
f2e81adf95
Changes to be committed:
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modified: .gitignore
deleted: xxx.csv
2025-02-05 19:28:19 +01:00
Eric Coissac
0a567f621c
small changes
2025-01-24 18:12:37 +01:00
Eric Coissac
d066bb6878
Changes to be committed:
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modified: .gitignore
modified: cmd/test/main.go
modified: pkg/obioptions/version.go
2025-01-09 07:24:41 +01:00
Eric Coissac
ccd3b06532
Merge branch 'master' into taxonomy
2024-12-20 20:06:57 +01:00
Eric Coissac
7884a74f9c
Patch a bug in obitagpcr
2024-11-18 21:10:47 +01:00
Eric Coissac
36327c79c8
Changes to be committed:
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modified: .gitignore
new file: pkg/obitax/default_taxonomy.go
modified: pkg/obitax/taxon.go
modified: pkg/obitax/taxonnode.go
modified: pkg/obitax/taxonomy.go
modified: pkg/obitax/taxonset.go
modified: pkg/obitax/taxonslice.go
modified: pkg/obitools/obifind/iterator.go
modified: pkg/obitools/obifind/options.go
2024-11-16 10:01:49 +01:00
4127ddb26f
.gitignore
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Former-commit-id: e1dcb41970f7a5405005cda8a1bbd90798e8020d
2024-02-27 07:29:14 +01:00
f2f7b4574e
update the geometric obitag
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Former-commit-id: acd8fe1c8c1cf443098432d818397b0b5d02df33
2024-01-17 23:38:51 +01:00
6fca03227a
Archive cleaning
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Former-commit-id: ded6d9cb43e3ecdf6eb6965e73580ce30ab986c5
2024-01-04 14:27:33 +01:00
5b57139450
Reduce doc size
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Former-commit-id: 6f92f375e9cf92159e769ce562071bb56a871819
2024-01-04 14:17:44 +01:00
c2533667b2
Tag a Fatal bug release 4.0.5
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Former-commit-id: 10b27c6d3867756d3159ef22eefd75db3fab84d0
2023-08-29 18:32:00 +02:00
446ba06c63
edited .gitignore
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Former-commit-id: 7090da08a2acd8d73d3c9e3aced387862bcc9822
2023-03-28 21:31:31 +07:00
d4b185b716
Adds some new dependencies
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Former-commit-id: 2f31ea6f852651e1ffca1d9ce78b17bddd26f2bb
2023-03-07 11:12:39 +07:00
6c5fc8f65b
Save change in various files
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Former-commit-id: 428f8ee77c584b79cc2ef45eef2902c3e0754c77
2023-02-23 23:45:41 +01:00
f56363a100
Patch an embl/genbank parser error
2023-02-16 13:30:42 +01:00
3a151fc0a0
updated gitignire
2023-01-31 23:14:33 +01:00
f4daa7f97f
Modify the gitignore
2022-11-17 12:05:11 +01:00
a71e65963b
Modify the .gitignore
2022-08-21 17:53:51 +02:00
a18745a34d
Modify the gitignore
2022-02-24 12:15:09 +01:00
f5b278f5ec
edit .gitignore
2022-02-24 07:09:35 +01:00
3586ecc483
second version of obidistribute and a first buggy version of obiuniq
2022-02-15 00:47:02 +01:00
b931321ba1
Adds the hash option to obidistribute
2022-02-14 09:12:57 +01:00
b193c3edfe
adds the obifind command to gitignore
2022-02-07 11:52:56 +01:00
e9cdfd7e03
Make subseq method dealing with qualities
2022-02-01 18:49:32 +01:00
703eb62819
Adds elements to .gitignore
2022-01-18 13:10:56 +01:00
a0ba77792a
Adds fasta and fastq file to the main gitignore file
2022-01-14 15:20:11 +01:00
bfa724dca3
adds the bin directory to the gitignore file
2022-01-14 15:18:36 +01:00
b9b9c0f179
Patch module name from oa2 to obitools
2022-01-13 23:43:01 +01:00
