Update GitHub Actions workflow to use setup-go v5 and align with latest tooling practices.
Update version to 4.4.15 in version.txt and pkg/obioptions/version.go.
Add comprehensive documentation for the canonical super-kmer strategy, including:
- Analysis of index v1 limitations
- Experimental observations on super-kmer efficiency
- Detailed pipeline for building v3 index
- Explanation of minimizer-canonization
- Description of unitig construction and frequency filtering
- Storage format specifications for v3
- Aho-Corasick matching implementation
This change introduces a major improvement in index compactness and performance through the use of canonical super-kmers, unitigs, and efficient storage formats.
This commit simplifies the artifact packaging process by creating a single tar.gz file containing all binaries for each platform, instead of individual files. It also updates the release notes to reflect the new packaging approach and corrects the documentation to use the new naming convention 'obitools4' instead of '<tool>'.
Mise à jour du workflow de release pour utiliser ubuntu-24.04-arm au lieu de ubuntu-latest pour ARM64, et macos-15-intel au lieu de macos-latest pour macOS. Suppression de la compilation croisée pour ARM64 et ajustement de l'installation des outils de build pour macOS.
This commit introduces a new build job that compiles binaries for multiple platforms (Linux, macOS) and architectures (amd64, arm64). It also refactors the release process to download pre-built artifacts and simplify the release directory preparation. The workflow now uses matrix strategy for building binaries and downloads all artifacts for the final release, removing the previous manual build steps for each platform.
Modification du fichier de workflow de release pour compiler uniquement les outils obitools lors de la construction des binaires pour chaque plateforme (Linux AMD64, Linux ARM64, macOS AMD64, macOS ARM64, Windows AMD64). Cela permet d'optimiser le processus de build en ne générant que les binaires nécessaires.
This commit introduces a new GitHub Actions workflow to automatically create releases when tags matching the pattern 'Release_*' are pushed. It also updates the Makefile to use the new tag format 'Release_<version>' for tagging commits, ensuring consistency with the new release automation.
