 Eric Coissac
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7542e33010
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Several bugs dicoverd during the doc writing
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2025-04-04 16:59:27 +02:00 |
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Eric Coissac
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8671285d02
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add the --min-sample-count option to obiclean.
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2025-02-24 08:48:31 +01:00 |
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Eric Coissac
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51d11aa36d
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Changes to be committed:
modified: pkg/obialign/alignment.go
modified: pkg/obialign/pairedendalign.go
modified: pkg/obioptions/version.go
modified: pkg/obitools/obipairing/pairing.go
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2025-02-23 17:37:56 +01:00 |
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Eric Coissac
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7c4042df6b
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introduce obidefault
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2025-01-27 17:12:45 +01:00 |
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Eric Coissac
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becb995e3d
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misspellings penality -> pelnalty
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2025-01-09 07:22:23 +01:00 |
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Eric Coissac
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d29a56dcbf
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Changes to be committed:
modified: Release-notes.md
modified: pkg/obialign/pairedendalign.go
modified: pkg/obilua/obiseq.go
modified: pkg/obioptions/version.go
modified: pkg/obiseq/biosequence.go
modified: pkg/obitools/obipairing/pairing.go
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2024-11-27 09:56:22 +01:00 |
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Eric Coissac
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1b1cd41fd3
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Add some code refactoring from the blackboard branch
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2024-08-02 12:35:46 +02:00 |
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Eric Coissac
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e6b87ecd02
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Reduce memory allocation events
Former-commit-id: fbdb2afc857b02adc2593e2278d3bd838e99b0b2
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2024-06-22 21:01:53 +02:00 |
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 coissac
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a36e830de3
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homogenize worker count
Former-commit-id: 4352ac6694c08023cdf0e090723fac8af655cea4
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2023-12-20 08:14:07 +01:00 |
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coissac
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37c3e16d5d
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Adds the option --pairing-scale to obipairing
Former-commit-id: c60416708467f5e818e70e08b3c512014b6212f0
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2023-12-07 12:28:16 +01:00 |
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coissac
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8d77cc4133
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Change path of the obitools pkg
Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65
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2023-11-29 12:14:37 +01:00 |
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coissac
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b556e045e5
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Adds option to tune the pairing of the sequences in obipairing and some stats to the results
Former-commit-id: a6cf9cb4d4ab20a433a2534fd7d11cd3ca8ebbaa
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2023-11-24 12:29:37 +01:00 |
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coissac
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ec31ae86b9
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Adds some stats in obiparing about fast align results
Former-commit-id: 44f6d6538e759dd7dc1db068a812957f6b20f50d
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2023-11-24 10:57:10 +01:00 |
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coissac
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d88de15cdc
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Refactoring codes for removing buffer size options. An some other changes...
Former-commit-id: 10b57cc1a27446ade3c444217341e9651e89cdce
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2023-03-07 11:12:13 +07:00 |
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coissac
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6f28d2ab68
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Patch a bug introduced by the new model for paired sequences
Former-commit-id: 7947e28ac8252b7ed46bdb9175077d412bad0aca
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2023-02-24 10:23:26 +01:00 |
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coissac
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072b85e155
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change the model for representing paired reads and extend its usage to other commands
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2023-02-23 23:35:58 +01:00 |
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coissac
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4117cbdd08
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Stabilize the obipairing output. whant run twice on the same dataset results are identical
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2023-02-05 11:06:31 +01:00 |
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coissac
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f97f92df72
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rename the iterator class
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2023-01-22 22:04:17 +01:00 |
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coissac
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29563aa94e
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Rename the Length methods Len to follow GO standart
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2022-11-17 11:09:58 +01:00 |
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coissac
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09fc426b67
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Refactoring related to iterators
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2022-11-16 17:13:03 +01:00 |
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coissac
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f8df48338d
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Several bug in annotation management
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2022-10-12 23:01:47 +02:00 |
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coissac
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abcf02e488
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Start to use leveled log
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2022-02-24 12:14:52 +01:00 |
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coissac
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f18cc034bb
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add an option alias -O for the old obi format
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2022-02-24 07:26:55 +01:00 |
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coissac
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eaf65fbcce
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Some code refactoring, a new version of obiuniq more efficient in memory and a first make file allowing to build obitools
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2022-02-24 07:08:40 +01:00 |
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coissac
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2e7c1834b0
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Big change iin the data model, and a first version of obiuniq
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2022-02-21 19:00:23 +01:00 |
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coissac
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eb32620bb3
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Adds a first version of a new obidistribute command
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2022-02-14 00:01:01 +01:00 |
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coissac
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38e4655f38
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Correct for a strange bug...
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2022-02-07 11:51:35 +01:00 |
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coissac
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251d3be923
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Add automatic garbage collection on ApatPattern
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2022-01-24 17:26:30 +01:00 |
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coissac
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6571296bb2
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Add some documentation
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2022-01-16 19:53:39 +01:00 |
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coissac
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64676db3f4
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Connect the command line options to the algorithm of obipairing
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2022-01-16 17:30:30 +01:00 |
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coissac
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576a9f4d2d
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A global version of a Slice pool
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2022-01-16 00:21:42 +01:00 |
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coissac
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e1b7e1761c
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Change the memory management for thee BuildAlignment function
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2022-01-15 19:10:16 +01:00 |
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coissac
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e8fff6477b
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Work on iterators and recycling of biosequences
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2022-01-14 23:11:36 +01:00 |
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coissac
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ef66ca4972
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Code refactoring
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2022-01-14 17:32:12 +01:00 |
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coissac
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ff40222902
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Code reefactoring
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2022-01-14 16:10:19 +01:00 |
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coissac
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b9b9c0f179
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Patch module name from oa2 to obitools
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2022-01-13 23:43:01 +01:00 |
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coissac
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f53bf1b804
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First commit
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2022-01-13 23:27:39 +01:00 |
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